************************************************************ This is an example of the output when HMMSTR is used to predict backbone angles, secondary structure and context symbols. You should refer to paper (available online at this site) for more details about the method, the meaning of "context symbols", etc. ************************************************************ 1 ....,....1....,....2....,....3....,....4....,....5 Seq EDCSSDLTSGISTKRIYYVSPNGNSSNNGSSFNQPMSFSTAMNAVNPGET Angles HGBHHHBBBxBBHHEEEEEBBGxBBBBGxBBEBBBBBHHHHHHHBBBlBE confid 34445444414444456777452554431555465456777777778878 Sec struct LLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLHHHHHHHLLLLLE confid 77766655676665535655788766788766676555666654678974 Context nnnn n confid 5545 6 51 ....,....6....,....7....,....8....,....9....,....0 Seq ILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPD Angles EEEEBeEEEEBEEBxBBBEEEEEBGxBBlBBEEEEEEEHBBBEEEEBBBH confid 88876467777554241677776542567778887544236667654765 Sec struct EEEELLLEEELLLLLLLLEEEEELLLLLLLLEEEEELLLLLLEELLLLLL confid 77665655554556777646654578778746776546776455456775 Context nnnnhhhnnn nnnnn nnmnnhhhhhhnn confid 4445444554 65445 5444544444455 101 ....,....1....,....2....,....3....,....4....,....5 Seq SQWDQASYGFYVTGDYWYFKGVEVTRKGYQGAYVEGSHNTFENTNNHHNR Angles HHHHHHHHxBEEEEBEEEEBlBEEEEEEEBlEEEExBHHHHHHHHHHHBH confid 66556555166652444464587765435347776444444544444434 Sec struct LLHHHLLLLLLELLLLLLLLLLEEELLLLLLLEEELLLLLLLLLLLLLLL confid 44444445654446655546764554566775554676654443334567 Context n nnnhhhhhhhnnn confid 5 6554444444555