***************************************************************** Predicted fragments The key is as follows: column 1 : a 5-letter code, significant only if an exact match was found in the local PDBselect database. This would have to be done with local collaboration. We have only a small subset of the PDB. column 2 : position in the sequence of the starting position in the fragment. column 3 : PDB residue label, if an exact match was found. column 4 : sequence of the segment predicted. column 5 : PDB code of the paradigm fragment (the predicted structure) column 6 : PDB chain code of the paradigm fragment column 7 : PDB residue label of the paradigm fragment column 8 : sequence of the paradigm fragment column 9 : I-sites cluster identifier. This can be used to find the sequence-structure motif. See our web page: http://isites.bio.rpi.edu/Isites/ISL_table.html column 10: sequence score. Not useful to you. column 11: confidence. This is approximately the probability of being right, but confidences > 1. occur which should be considered to be 0.95+. (The confidences were weighted up or down to account for different prior probabilities.) column 12: distance matrix error (dme) between predicted and true structure, again, if a PDB file with an exact match to the sequence was found. column 13: maximum deviation in backbone torsion angles (mda), as above. ***************************************************************** ### 2sga_ 16 15 high scores. 5 redundancies. Highest= 0.30 2sga_ 3 18 GGEAITT 1ice A 278 KVIIIQA 7428 116.26 0.30 1.03 171.9 2sga_ 3 18 GGEAITT 1gpr _ 77 GREILIH 7410 119.74 0.29 0.87 177.6 2sga_ 3 18 GGEAITT 1mmo G 27 KAAEMLK 7135 123.37 0.26 3.75 175.2 2sga_ 3 18 GGEAITTG 1pbe _ 145 GERLRLDC 8300 115.99 0.26 0.78 158.4 2sga_ 3 18 GGEA 1psd A 90 DLDA 4137 84.93 0.23 1.48 153.0 2sga_ 3 18 GGEAITTG 153l _ 122 NFIKTIQK 8128 124.67 0.22 4.07 178.2 2sga_ 3 18 GGEAITTGG 2dkb _ 310 PAAVGLRVL 9022 124.63 0.22 3.85 177.3 2sga_ 3 18 GGEAIT 1ctm _ 125 EITFPI 6488 107.77 0.21 0.99 151.2 2sga_ 3 18 GGEAITTGGSR 1isc A 102 SFADFKAQFTD 11105 118.15 0.20 3.46 177.9 2sga_ 3 18 GGEAIT 1ice A 278 KVIIIQ 6288 97.13 0.18 1.11 171.9 2sga_ 3 18 GGEAI 1sbp _ 35 NVVID 5097 97.41 0.18 1.14 159.0 2sga_ 3 18 GGEAITTGGSR 2liv _ 279 TTYAALQSLQA 11196 122.84 0.15 3.44 178.9 2sga_ 3 18 GGEAITTGGSR 2ctc _ 21 FMDLLVAEHPQ 11024 112.31 0.15 3.43 177.7 2sga_ 3 18 GGEAIT 1jap A 113 IKDAFE 6513 104.20 0.14 3.02 179.4 2sga_ 3 18 GGEAIT 1ice A 280 IIIQAC 6139 79.94 0.12 0.97 147.6 ### 2sga_ 17 15 high scores. 8 redundancies. Highest= 0.43 2sga_ 4 19 GEAITTG 1ice A 278 KVIIIQA 7428 134.64 0.43 0.31 139.2 2sga_ 4 19 GEAITT 1thv _ 3 FEIVNR 6355 131.09 0.38 0.53 130.8 2sga_ 4 19 GEAI 1tsp _ 167 IECK 4190 108.94 0.31 0.30 123.7 2sga_ 4 19 GEAITT 1ice A 278 KVIIIQ 6288 112.19 0.29 0.31 112.9 2sga_ 4 19 GEAI 3pmg A 219 IRID 4227 95.79 0.28 0.36 166.4 2sga_ 4 19 GEA 1fc2 D 319 YKC 3260 80.94 0.28 0.13 98.2 2sga_ 4 19 GEAITTG 1gpr _ 77 GREILIH 7410 117.55 0.28 0.38 172.1 2sga_ 4 19 GEAITTGG 1qrd A 18 NYAMKEAA 8257 123.67 0.26 3.84 178.9 2sga_ 4 19 GEAITT 1ice A 280 IIIQAC 6139 93.12 0.22 0.49 135.0 2sga_ 4 19 GEAITTGG 1pbe _ 145 GERLRLDC 8300 109.14 0.22 1.19 143.1 2sga_ 4 19 GEAITTGGS 1ecp A 134 VRNAVDAAK 9480 128.45 0.21 3.64 177.7 2sga_ 4 19 GEAITTGGSR 1dpg A 51 DDEFKQLVRD 10523 123.42 0.18 3.47 174.4 2sga_ 4 19 GEAITTGGSRC 1pox A 14 GAAVIKVLEAW 11648 124.68 0.17 3.40 175.6 2sga_ 4 19 GEAIT 1sbp _ 35 NVVID 5097 91.44 0.14 0.37 120.8 2sga_ 4 19 GEAITTGGSRC 8acn _ 288 IANLADEFKDH 11211 91.11 0.11 3.32 177.2 ### 2sga_ 18 15 high scores. 8 redundancies. Highest= 0.42 2sga_ 5 29 EAITTGG 2dld A 228 GVVIVNC 7312 121.29 0.42 1.29 174.9 2sga_ 5 29 EAITT 1sbp _ 35 NVVID 5097 128.44 0.41 0.25 53.2 2sga_ 5 29 EAITTG 1ice A 280 IIIQAC 6139 117.41 0.39 0.55 127.8 2sga_ 5 29 EAITTGG 1ice A 278 KVIIIQA 7428 123.30 0.35 1.25 149.6 2sga_ 5 29 EAITTG 1ctm _ 125 EITFPI 6488 127.44 0.33 0.48 161.3 2sga_ 5 29 EAITTG 1ice A 278 KVIIIQ 6288 116.58 0.32 0.32 149.6 2sga_ 5 29 EAITTG 1hgx A 18 DDIQKR 6507 115.31 0.25 4.03 175.1