DOWNLOAD MASKER INSTALL PACKAGE

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                      MASKER
This package contains the source code for MASKER, a program 
that calculates the solvent excluded surface of a molecule.
Three program that use the MASKER module are included in this package:
pdbmask -- calculates the solvent excluded surface of atoms in PDB format
maskercm -- calculates the pairwise buried surface of residues in a protein
voidmask -- finds the locations of buried empty spaces with in a protein, or any molecule.  

FOR MORE INFORMATION SEE:

C. Bystroff (2002) "MASKER: Improved solvent excluded molecular 
surface area estimations using Boolean masks"
Protein Engineering, 15:959-965 

INSTALLATION:

	 (0) Unpack masker
	 tar -zxvf masker.tgz
	 (1) go to masker directory
	 cd masker
	 (2) clean
	 make clean
	 (3) set resolution of masks
	 make setxxx
	 xxx =  128, 256, 512, 1024, 2048 or 4096
	 (4) compile (make sure g95 is installed first)
	 make all
	 (5) Install masks
	 make install
	 (6) Run masker
	 xpdbmask

FILES in masker.tgz
-rw-r--r-- bystrc/users   4679 2007-06-12 13:13:43 masker/binarymask.f90
-rw-r--r-- bystrc/users   8445 2001-11-29 15:23:46 masker/bmdmask.f90
-rw-r--r-- bystrc/users   6514 2005-04-01 13:09:37 masker/cijmask.f90
-rw-r--r-- bystrc/users   3227 2007-06-14 20:27:29 masker/collartest.f90
-rw-r--r-- bystrc/users   5339 2001-11-29 15:23:46 masker/colormasks.f90
-rw-r--r-- bystrc/users   6190 2010-05-19 17:50:51 masker/contactmask.f90
-rw-r--r-- bystrc/users   1528 2007-05-31 17:42:55 masker/countbits.f90
-rw-r--r-- bystrc/users   2645 2002-03-09 09:10:33 masker/countclust.f90
-rw-r--r-- bystrc/users   4590 2007-06-14 20:29:05 masker/diffmask.f90
-rw-r--r-- bystrc/users   7136 2007-06-14 20:29:34 masker/edgemask.f90
-rw-r--r-- bystrc/users  31975 2001-11-29 15:23:46 masker/exact.f90
-rw-r--r-- bystrc/users  13659 2002-06-11 15:32:59 masker/getms_d.f90
-rw-r--r-- bystrc/users   1122 2002-02-27 10:42:01 masker/histo.f90
-rw-r--r-- bystrc/users    347 2007-06-15 11:52:31 masker/makecollars.f90
-rw-r--r-- bystrc/users   4816 2007-06-07 10:53:07 masker/makemask.f90
-rw-r--r-- bystrc/users  39372 2001-11-29 15:23:46 masker/masker2.f90
-rw-r--r-- bystrc/users  74046 2002-06-11 15:33:30 masker/maskerB.f90
-rw-r--r-- bystrc/users  86210 2002-05-03 08:03:43 masker/masker_deriv.f90
-rw-r--r-- bystrc/users 137462 2010-05-19 17:52:28 masker/masker.f90
-rw-r--r-- bystrc/users 122523 2007-06-14 11:54:01 masker/masker_ming.f90
-rw-r--r-- bystrc/users   6224 2007-06-14 20:48:38 masker/maskerserver.f90
-rw-r--r-- bystrc/users   3675 2001-11-29 15:23:46 masker/maskmask.f90
-rw-r--r-- bystrc/users  10571 2006-05-16 17:16:25 masker/mcmask2.f90
-rw-r--r-- bystrc/users   6056 2001-11-29 15:23:46 masker/mcmask.f90
-rw-r--r-- bystrc/users  25620 2010-05-20 10:13:35 masker/parameters.f90
-rw-r--r-- bystrc/users   5973 2010-05-19 17:35:37 masker/pdbmask.f90
-rw-r--r-- bystrc/users  19623 2007-04-16 11:11:45 masker/pdbmask_test.f90
-rw-r--r-- bystrc/users  19596 2001-11-29 15:23:46 masker/pdbmask_traj.f90
-rw-r--r-- bystrc/users   2002 2007-06-15 17:04:30 masker/plottheta.f90
-rw-r--r-- bystrc/users   2163 2010-05-17 16:13:37 masker/r3drotate.f90
-rw-r--r-- bystrc/users   5310 2001-11-29 15:23:46 masker/remakemask.f90
-rw-r--r-- bystrc/users  14714 2006-01-21 19:47:40 masker/sas2ps.f90
-rw-r--r-- bystrc/users   3596 2007-06-12 13:14:14 masker/showmask.f90
-rw-r--r-- bystrc/users   3622 2001-11-29 15:23:46 masker/sortpdbmask.f90
-rw-r--r-- bystrc/users    800 2007-06-16 10:17:56 masker/test_date_and_time.f90
-rw-r--r-- bystrc/users    248 2007-06-15 16:45:48 masker/test.f90
-rw-r--r-- bystrc/users   1698 2001-11-29 15:23:46 masker/tetrahedron.f90
-rw-r--r-- bystrc/users   9514 2010-05-17 16:38:20 masker/triangles.f90
-rw-r--r-- bystrc/users   7728 2001-12-21 14:32:43 masker/twomask.f90
-rw-r--r-- bystrc/users    542 2001-11-29 15:23:46 masker/usage.f90
-rw-r--r-- bystrc/users    527 2001-11-29 15:23:46 masker/usecbits.f90
-rw-r--r-- bystrc/users    611 2002-02-01 18:13:03 masker/util.f90
-rw-r--r-- bystrc/users   9390 2002-03-15 17:12:18 masker/vdwsim.f90
-rw-r--r-- bystrc/users  65729 2010-05-17 16:09:06 masker/vectormath.f90
-rw-r--r-- bystrc/users   7459 2010-05-19 12:52:57 masker/viewmask.f90
-rw-r--r-- bystrc/users   8615 2008-10-15 10:57:21 masker/voidmask.f90
-rw-r--r-- bystrc/users   5891 2001-11-29 15:23:46 masker/waterbowl2.f90
-rw-r--r-- bystrc/users   5055 2010-05-19 12:07:13 masker/Makefile
-rwxr-xr-x bystrc/users   5127 2010-05-19 12:45:52 masker/INSTALL
-rw-r--r-- bystrc/users   1758 2005-09-18 11:35:55 masker/atoms.lib
-rwxr-xr-x bystrc/users    516 2010-05-19 15:54:22 masker/setup.csh
-rw-r--r-- bystrc/users   8576 2007-06-01 13:45:43 masker/128.pdb
-rw-r--r-- bystrc/users  17152 2007-06-06 17:00:49 masker/256.pdb
-rw-r--r-- bystrc/users  34304 2007-06-13 08:49:20 masker/512.pdb
-rw-r--r-- bystrc/users  68608 2007-06-13 07:12:14 masker/1024.pdb
-rw-r--r-- bystrc/users 137216 2007-06-12 17:26:20 masker/2048.pdb
-rw-r--r-- bystrc/users 276437 2007-06-06 17:54:14 masker/4096.pdb
-rw-r--r-- bystrc/users    340 2010-05-19 15:31:07 masker/slopes4.5.dat
-rw-r--r-- bystrc/users    340 2001-12-17 16:47:46 masker/slopes4.5.dat.old
-rw-r--r-- bystrc/users    170 2010-05-19 17:52:47 masker/slopes9.0.dat
-rw-r--r-- bystrc/users  65544 2001-11-29 15:23:46 masker/cbits32.bin
-rw-r--r-- bystrc/users  65544 2010-05-19 17:52:47 masker/cbits.bin
-rw-r--r-- bystrc/users   3635 2010-05-18 19:46:19 masker/README
-rw-r--r-- bystrc/users    810 2007-06-14 10:27:40 masker/test.pdb
-rw-r--r-- bystrc/users 179093 2010-05-19 12:22:09 masker/forcefield.prm
-rw-r--r-- bystrc/users    301 2010-05-19 12:30:13 masker/test.results
-rwxr-xr-x bystrc/users    107 2010-05-19 17:52:53 masker/voidmask
-rwxr-xr-x bystrc/users    106 2010-05-19 17:52:53 masker/pdbmask
-rwxr-xr-x bystrc/users    110 2010-05-19 17:52:53 masker/contactmask
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last modified
Thu May 20 11:04:05 EDT 2010