Email address to which results are to be sent:
Check your spelling! If the address is wrong, you will receive
Add a short identifying remark for this sequence:
Type or paste your amino acid sequence information below.
SPECIFY INPUT FORMAT:
from PDB coordinates.
Multiple sequence alignment file:
Optional chain identifier:
PSI-BLAST to generate multiple sequence alignment.
A multiple sequence alignment in SAF format (only if using PSI-BLAST).
Sequence names and weights used for generating the sequence profile.
A set of multiple, predicted fragments sorted by confidence.
A set of predicted backbone angles and confidences based on linking fragments.
A one-dimensional prediction of backbone angle (phi/psi) regions based on linked fragments.
A prediction of 3-state secondary structure, backbone angles and context symbols using
A contact map prediction using HMMSTR-CM
Complete list of HMMSTR state probabilities
A set of 3D coordinates in PDB format, generated using ROSETTA.
I-sites method to use:
PHD + I-sites1
HMMSTR model to use:
Maximum e-value for PSI-BLAST:
Ignore I-sites shorter than
in fragment prediction report.
Minimum allowed percent identity for inclusion in profile :
Minimum allowed confidence of fragment prediction:
Number of parent sequence in an input multiple alignment (usually 1) :
Create an unrefined homology-based model if possible:
Label for internal use:
Number output coordinates starting from: