Email address to which results are to be sent: Check your spelling! If the address is wrong, you will receive no messages!
Add a short identifying remark for this sequence:
Type or paste your amino acid sequence information below. SPECIFY INPUT FORMAT: Single sequence in 1-letter code. PDB format. Use PSI-BLAST to generate alignment. Use a low-complexity filter. --- or --- Multiple sequence alignment file in HSSP FASTA Clustal SAF format: Optional chain identifier:
Output options: A multiple sequence alignment in SAF format (only if using PSI-BLAST). example Sequence names and weights used for generating the sequence profile. example A set of multiple, predicted fragments sorted by confidence. example A set of predicted backbone angles and confidences based on linking fragments. example A one-dimensional prediction of backbone angle (phi/psi) regions based on linked fragments. example A prediction of 3-state secondary structure, backbone angles and context symbols using HMMSTR. example A set of 3D coordinates in PDB format, generated using ROSETTA. example
Method to use: Use PHD + I-sites example Use I-sites ONLY HMMSTR model to use: R D C Maximum e-value for PSI-BLAST: Window size for SEG filter: Low-complexity cutoff for SEG filter: Ignore I-sites shorter than in fragment prediction report. Minimum allowed percent identity for inclusion in profile : Minimum allowed confidence of fragment prediction: Number of parent sequence in an input multiple alignment (usually 1) : Look for a homolog of known structure using Psi-Blast (non ab-initio prediction!): Label : Number output coordinates starting from: