Data Arangement:
Y
------------------
(X) A C G U
------------------
5' ==> 3'
AX
AY
3' <== 5'
(A) . . . .
(C) . . . .
(G) . . . .
(U) -0.70 -0.10 -0.70 -0.10
--------------------------------
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
AX AX AX AX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . . . . . . . . -0.90
. . . . . . . . . . . . . . -2.10 .
. . . . . . . . . . . . . -1.70 . -0.50
. . . . . . . . . . . . -0.90 . -1.00 .
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
CX CX CX CX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . . . . -1.80 . . . .
. . . . . . . . . . -2.90 . . . . .
. . . . . . . . . -2.00 . -1.20 . . . .
. . . . . . . . -1.70 . -1.90 . . . . .
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
GX GX GX GX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . -2.30 . . . . . . . -1.10
. . . . . . -3.40 . . . . . . . -2.10 .
. . . . . -2.90 . -1.40 . . . . . -1.90 . -0.40
. . . . -2.10 . -2.10 . . . . . -1.00 . 1.50 .
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
UX UX UX UX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . -1.10 . . . . . . . -0.80 . . . .
. . -2.30 . . . . . . . -1.40 . . . . .
. -1.80 . -0.80 . . . . . -1.20 . -0.20 . . . .
-0.90 . -1.10 . . . . . -0.50 . -0.40 . . . . .
Data Arangement:
Y
------------------
(X) A C G U
------------------
5' ==> 3'
AX
AY
3' <== 5'
(A) . . . .
(C) . . . .
(G) . . . .
(U) -0.70 -0.10 -0.70 -0.10
--------------------------------
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
AX AX AX AX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . -1.00 . . . -0.70 . . . -1.80 -0.80 -1.00 -1.70 -1.00
. . -1.10 . . . -1.10 . . . -2.30 . -0.70 -0.70 -0.70 -0.70
. -1.40 . -1.20 . -1.00 . -0.90 . -2.10 . -2.00 -1.50 -1.00 -1.00 -1.00
-0.80 . -0.80 . -0.70 . -0.70 . -1.50 . -1.50 . -0.80 -0.80 -0.80 -0.80
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
CX CX CX CX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . -0.80 . . . -0.60 -1.40 -2.00 -2.10 -1.90 . . . -0.60
. . -1.30 . . . -0.60 . -1.00 -1.10 -1.00 -0.80 . . -0.80 .
. -2.00 . -1.40 . -1.10 . -0.90 -2.10 -1.90 -1.40 -1.90 . -1.50 . -1.10
-1.00 . -1.00 . -0.70 . -0.70 . -1.40 -1.50 -1.40 -1.20 -0.80 . -0.80 .
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
GX GX GX GX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . -1.80 -1.10 -1.30 -2.00 -1.30 . . . -1.20 -0.80 -1.00 -1.70 -1.00
. . -2.00 . -1.10 -0.60 -0.60 -0.50 . . -1.40 . -0.70 -0.70 -0.70 -0.70
. -2.10 . -2.00 -2.30 -1.50 -1.40 -1.50 . -1.40 . -1.30 -1.50 -1.00 -1.00 -1.00
-1.70 . -1.70 . -0.80 -0.80 -0.80 -0.70 -1.00 . -1.00 . -0.80 -0.80 -0.80 -0.80
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
UX UX UX UX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-1.00 -0.80 -1.80 -0.90 . . . -0.50 -1.20 -1.40 -2.00 -1.40 . . . -0.50
-0.70 -0.60 -0.30 -0.50 . . -0.50 . -0.90 -0.90 -0.70 -0.70 . . -0.70 .
-1.80 -0.90 -1.20 -0.90 . -0.80 . -0.70 -2.00 -1.40 -1.30 -1.40 . -1.20 . -0.90
-0.30 -0.60 -0.30 -0.50 -0.70 . -0.70 . -0.90 -1.10 -0.90 -0.90 -0.80 . -0.80 .
Data Arangement:
Y
------------------
(X) A C G U
------------------
5' ==> 3'
AX
AY
3' <== 5'
(A) . . . .
(C) . . . .
(G) . . . .
(U) -0.70 -0.10 -0.70 -0.10
--------------------------------
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
AX AX AX AX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . -1.00 . . . -1.00 . . . -2.20 -1.00 -1.00 -2.20 -0.50
. . -1.50 . . . -1.50 . . . -2.70 . -1.00 -1.00 -0.20 -1.00
. -1.50 . -1.00 . -1.50 . -1.00 . -2.70 . -2.20 -2.20 -0.50 -1.00 -0.50
-1.00 . -1.50 . -1.00 . -1.50 . -2.20 . -2.70 . -0.30 -1.00 -0.30 -2.00
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
CX CX CX CX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . -1.00 . . . -1.00 -1.50 -1.50 -2.70 -1.90 . . . -1.00
. . -1.50 . . . -1.50 . -1.50 -1.50 -1.00 -1.50 . . -1.50 .
. -1.50 . -1.00 . -1.50 . -1.00 -2.70 -1.90 -1.50 -1.90 . -1.50 . -1.00
-1.00 . -1.50 . -1.00 . -1.50 . -1.40 -1.50 -1.40 -2.50 -1.00 . -1.50 .
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
GX GX GX GX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . -2.20 -1.50 -1.50 -2.70 -1.30 . . . -1.00 -1.50 -1.50 -2.70 -1.30
. . -2.70 . -1.50 -1.50 -0.60 -1.50 . . -1.50 . -1.50 -1.50 -0.60 -1.50
. -2.70 . -2.20 -2.70 -1.50 -1.50 -1.50 . -1.50 . -1.00 -2.70 -1.50 -1.50 -1.50
-2.20 . -2.70 . -0.80 -1.50 -0.80 -2.50 -1.00 . -1.50 . -0.80 -1.50 -0.80 -2.50
Y Y Y Y
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
UX UX UX UX
AY CY GY UY
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-1.00 -1.00 -2.20 -0.40 . . . -1.00 -1.00 -1.00 -2.20 -0.40 . . . -2.00
-1.00 -1.00 0.20 -1.00 . . -1.50 . -1.00 -1.00 0.20 -1.00 . . -2.50 .
-2.20 -0.40 -1.00 -0.40 . -1.50 . -1.00 -2.20 -0.40 -1.00 -0.40 . -2.50 . -2.00
0.20 -1.00 0.20 -2.00 -1.00 . -1.50 . 0.20 -1.00 0.20 -2.00 -2.00 . -2.50 .
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
AX AX AX AX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . . . . . -0.80 -0.50 -0.80 -0.60
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
CX CX CX CX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . -1.70 -0.80 -1.70 -1.20 . . . .
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
GX GX GX GX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . -1.10 -0.40 -1.30 -0.60 . . . . -0.80 -0.50 -0.80 -0.60
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
UX UX UX UX
A C G U
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.70 -0.10 -0.70 -0.10 . . . . -1.20 -0.50 -1.20 -0.70 . . . .
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
A A A A
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . . . . . -0.30 -0.10 -0.20 -0.20
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
C C C C
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . . . . . -0.20 -0.30 0.00 0.00 . . . .
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
G G G G
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
. . . . -0.50 -0.30 -0.20 -0.10 . . . . -0.20 -0.20 -0.20 -0.20
X X X X
------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
U U U U
AX CX GX UX
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
-0.30 -0.30 -0.40 -0.20 . . . . -0.20 -0.20 -0.20 -0.20 . . . .
DESTABILIZING ENERGIES BY SIZE OF LOOP (INTERPOLATE WHERE NEEDED) hp3 ave calc no tmm;hp4 ave calc with tmm; ave all bulges SIZE INTERNAL BULGE HAIRPIN ------------------------------------------------------- 1 . 3.90 . 2 4.10 3.10 . 3 5.10 3.50 4.10 4 4.90 4.20 4.90 5 5.30 4.80 4.40 6 5.70 5.00 4.70 7 5.90 5.20 5.00 8 6.00 5.30 5.10 9 6.10 5.40 5.20 10 6.30 5.50 5.30 11 6.40 5.70 5.40 12 6.40 5.70 5.50 13 6.50 5.80 5.60 14 6.60 5.90 5.70 15 6.70 6.00 5.80 16 6.80 6.10 5.80 17 6.80 6.10 5.90 18 6.90 6.20 5.90 19 6.90 6.20 6.00 20 7.00 6.30 6.10 21 7.10 6.30 6.10 22 7.10 6.40 6.20 23 7.10 6.40 6.20 24 7.20 6.50 6.30 25 7.20 6.50 6.30 26 7.30 6.50 6.30 27 7.30 6.60 6.40 28 7.40 6.70 6.40 29 7.40 6.70 6.50 30 7.40 6.70 6.50
Data Arrangement:
Y
------------------
(X) A C G U
------------------
5' --> 3'
X
A A
U U
Y
3' <-- 5'
(A) . . . .
(C) . . . .
(G) . . . .
(U) . . . .
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
A A A C A G A U A G A U
U U U G U C U A U U U G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
C A C C C G C U C G C U
G U G G G C G A G U G G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
C U C G C C C A C U C G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
A U A G A C A A A U A G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
U U U G U C U A U U U G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
G U G G G C G A G U G G
Y Y Y Y Y Y
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
Data arrangement:
Y
----------------------------------------------------------------
(X) A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
----------------------------------------------------------------
5' ------> 3'
A \/ \_/ A
U /\ | U
3' <------ 5'
(AA) . . . . . . . . . . . . . . . .
(AC) . . . . . . . . . . . . . . . .
(AG) . . . . . . . . . . . . . . . .
(AU) . . . . . . . . . . . . . . . .
(CA) . . . . . . . . . . . . . . . .
(CC) . . . . . . . . . . . . . . . .
(CG) . . . . . . . . . . . . . . . .
(CU) . . . . . . . . . . . . . . . .
(GA) . . . . . . . . . . . . . . . .
(GC) . . . . . . . . . . . . . . . .
(GG) . . . . . . . . . . . . . . . .
(GU) . . . . . . . . . . . . . . . .
(UA) . . . . . . . . . . . . . . . .
(UC) . . . . . . . . . . . . . . . .
(UG) . . . . . . . . . . . . . . . .
(UU) . . . . . . . . . . . . . . . .
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
A \/ \_/ A
U /\ | U
3' <------ 5'
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.40 3.40 2.20 4.60 3.40 3.40 4.00 3.40 2.20 4.60 3.40 4.60 4.00 3.40 4.00 2.40
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.70 3.70 2.50 4.90 3.70 3.70 4.30 3.70 2.50 4.90 3.70 4.90 4.30 3.70 4.30 2.70
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.40 3.40 2.20 4.60 3.40 3.40 4.00 3.40 2.20 4.60 3.40 4.60 4.00 3.40 4.00 2.40
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.40 3.40 2.20 4.60 3.40 3.40 4.00 3.40 2.20 4.60 3.40 4.60 4.00 3.40 4.00 2.40
3.60 3.60 2.40 4.80 3.60 3.60 4.20 3.60 2.40 4.80 3.60 4.80 4.20 3.60 4.20 2.60
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.60 3.60 2.40 4.80 3.60 3.60 4.20 3.60 2.40 4.80 3.60 4.80 4.20 3.60 4.20 2.60
1.90 1.90 0.70 3.10 1.90 1.90 2.50 1.90 0.70 3.10 1.90 3.10 2.50 1.90 2.50 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
A \/ \_/ C
U /\ | G
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
2.90 2.90 1.70 3.60 2.90 2.90 2.90 2.90 1.70 3.80 2.90 3.60 3.10 2.90 2.90 1.90
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.20 3.20 2.00 3.90 3.20 3.20 3.20 3.20 2.00 4.10 3.20 3.90 3.40 3.20 3.20 2.20
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
2.90 2.90 1.70 3.60 2.90 2.90 2.90 2.90 1.70 3.80 2.90 3.60 3.10 2.90 2.90 1.90
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.90 2.90 1.70 3.60 2.90 2.90 2.90 2.90 1.70 3.80 2.90 3.60 3.10 2.90 2.90 1.90
3.10 3.10 1.90 3.80 3.10 3.10 3.10 3.10 1.90 4.00 3.10 3.80 3.30 3.10 3.10 2.10
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.10 3.10 1.90 3.80 3.10 3.10 3.10 3.10 1.90 4.00 3.10 3.80 3.30 3.10 3.10 2.10
1.40 1.40 0.20 2.10 1.40 1.40 1.40 1.40 0.20 2.30 1.40 2.10 1.60 1.40 1.40 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
A \/ \_/ G
U /\ | C
3' <------ 5'
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
1.20 1.20 0.00 1.30 1.20 1.20 0.80 1.20 0.00 1.70 1.20 1.30 0.80 1.20 0.80 0.20
2.90 2.90 1.70 3.00 2.90 2.90 2.50 2.90 1.70 3.40 2.90 3.00 2.50 2.90 2.50 1.90
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.20 3.20 2.00 3.30 3.20 3.20 2.80 3.20 2.00 3.70 3.20 3.30 2.80 3.20 2.80 2.20
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
1.20 1.20 0.00 1.30 1.20 1.20 0.80 1.20 0.00 1.70 1.20 1.30 0.80 1.20 0.80 0.20
2.90 2.90 1.70 3.00 2.90 2.90 2.50 2.90 1.70 3.40 2.90 3.00 2.50 2.90 2.50 1.90
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
2.90 2.90 1.70 3.00 2.90 2.90 2.50 2.90 1.70 3.40 2.90 3.00 2.50 2.90 2.50 1.90
3.10 3.10 1.90 3.20 3.10 3.10 2.70 3.10 1.90 3.60 3.10 3.20 2.70 3.10 2.70 2.10
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.10 3.10 1.90 3.20 3.10 3.10 2.70 3.10 1.90 3.60 3.10 3.20 2.70 3.10 2.70 2.10
1.40 1.40 0.20 1.50 1.40 1.40 1.00 1.40 0.20 1.90 1.40 1.50 1.00 1.40 1.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
A \/ \_/ U
U /\ | A
3' <------ 5'
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
1.70 1.70 0.50 2.40 1.70 1.70 2.20 1.70 0.50 2.50 1.70 2.40 2.20 1.70 2.20 0.70
3.40 3.40 2.20 4.10 3.40 3.40 3.90 3.40 2.20 4.20 3.40 4.10 3.90 3.40 3.90 2.40
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
3.70 3.70 2.50 4.40 3.70 3.70 4.20 3.70 2.50 4.50 3.70 4.40 4.20 3.70 4.20 2.70
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
1.70 1.70 0.50 2.40 1.70 1.70 2.20 1.70 0.50 2.50 1.70 2.40 2.20 1.70 2.20 0.70
3.40 3.40 2.20 4.10 3.40 3.40 3.90 3.40 2.20 4.20 3.40 4.10 3.90 3.40 3.90 2.40
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
3.40 3.40 2.20 4.10 3.40 3.40 3.90 3.40 2.20 4.20 3.40 4.10 3.90 3.40 3.90 2.40
3.60 3.60 2.40 4.30 3.60 3.60 4.10 3.60 2.40 4.40 3.60 4.30 4.10 3.60 4.10 2.60
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
3.60 3.60 2.40 4.30 3.60 3.60 4.10 3.60 2.40 4.40 3.60 4.30 4.10 3.60 4.10 2.60
1.90 1.90 0.70 2.60 1.90 1.90 2.40 1.90 0.70 2.70 1.90 2.60 2.40 1.90 2.40 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
A \/ \_/ G
U /\ | U
3' <------ 5'
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.40 3.40 2.20 4.60 3.40 3.40 4.00 3.40 2.20 4.60 3.40 4.60 4.00 3.40 4.00 2.40
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.70 3.70 2.50 4.90 3.70 3.70 4.30 3.70 2.50 4.90 3.70 4.90 4.30 3.70 4.30 2.70
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.40 3.40 2.20 4.60 3.40 3.40 4.00 3.40 2.20 4.60 3.40 4.60 4.00 3.40 4.00 2.40
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.40 3.40 2.20 4.60 3.40 3.40 4.00 3.40 2.20 4.60 3.40 4.60 4.00 3.40 4.00 2.40
3.60 3.60 2.40 4.80 3.60 3.60 4.20 3.60 2.40 4.80 3.60 4.80 4.20 3.60 4.20 2.60
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.60 3.60 2.40 4.80 3.60 3.60 4.20 3.60 2.40 4.80 3.60 4.80 4.20 3.60 4.20 2.60
1.90 1.90 0.70 3.10 1.90 1.90 2.50 1.90 0.70 3.10 1.90 3.10 2.50 1.90 2.50 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
A \/ \_/ U
U /\ | G
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
2.90 2.90 1.70 3.60 2.90 2.90 2.90 2.90 1.70 3.80 2.90 3.60 3.10 2.90 2.90 1.90
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.20 3.20 2.00 3.90 3.20 3.20 3.20 3.20 2.00 4.10 3.20 3.90 3.40 3.20 3.20 2.20
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
2.90 2.90 1.70 3.60 2.90 2.90 2.90 2.90 1.70 3.80 2.90 3.60 3.10 2.90 2.90 1.90
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.90 2.90 1.70 3.60 2.90 2.90 2.90 2.90 1.70 3.80 2.90 3.60 3.10 2.90 2.90 1.90
3.10 3.10 1.90 3.80 3.10 3.10 3.10 3.10 1.90 4.00 3.10 3.80 3.30 3.10 3.10 2.10
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.10 3.10 1.90 3.80 3.10 3.10 3.10 3.10 1.90 4.00 3.10 3.80 3.30 3.10 3.10 2.10
1.40 1.40 0.20 2.10 1.40 1.40 1.40 1.40 0.20 2.30 1.40 2.10 1.60 1.40 1.40 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
C \/ \_/ A
G /\ | U
3' <------ 5'
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.00 2.00 0.80 3.20 2.00 2.00 2.60 2.00 0.80 3.20 2.00 3.20 2.60 2.00 2.60 1.00
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.00 2.00 0.80 3.20 2.00 2.00 2.60 2.00 0.80 3.20 2.00 3.20 2.60 2.00 2.60 1.00
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.00 2.00 0.80 3.20 2.00 2.00 2.60 2.00 0.80 3.20 2.00 3.20 2.60 2.00 2.60 1.00
2.50 2.50 1.30 3.70 2.50 2.50 3.10 2.50 1.30 3.70 2.50 3.70 3.10 2.50 3.10 1.50
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.50 2.50 1.30 3.70 2.50 2.50 3.10 2.50 1.30 3.70 2.50 3.70 3.10 2.50 3.10 1.50
1.40 1.40 0.20 2.60 1.40 1.40 2.00 1.40 0.20 2.60 1.40 2.60 2.00 1.40 2.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
C \/ \_/ C
G /\ | G
3' <------ 5'
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.50 1.50 0.30 2.20 1.50 1.50 1.50 1.50 0.30 2.40 1.50 2.20 1.70 1.50 1.50 0.50
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.50 1.50 0.30 2.20 1.50 1.50 1.50 1.50 0.30 2.40 1.50 2.20 1.70 1.50 1.50 0.50
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.50 1.50 0.30 2.20 1.50 1.50 1.50 1.50 0.30 2.40 1.50 2.20 1.70 1.50 1.50 0.50
2.00 2.00 0.80 2.70 2.00 2.00 2.00 2.00 0.80 2.90 2.00 2.70 2.20 2.00 2.00 1.00
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.00 2.00 0.80 2.70 2.00 2.00 2.00 2.00 0.80 2.90 2.00 2.70 2.20 2.00 2.00 1.00
0.90 0.90 -0.30 1.60 0.90 0.90 0.90 0.90 -0.30 1.80 0.90 1.60 1.10 0.90 0.90 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
C \/ \_/ G
G /\ | C
3' <------ 5'
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
0.70 0.70 -0.50 0.80 0.70 0.70 0.30 0.70 -0.50 1.20 0.70 0.80 0.30 0.70 0.30 -0.30
1.50 1.50 0.30 1.60 1.50 1.50 1.10 1.50 0.30 2.00 1.50 1.60 1.10 1.50 1.10 0.50
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
0.70 0.70 -0.50 0.80 0.70 0.70 0.30 0.70 -0.50 1.20 0.70 0.80 0.30 0.70 0.30 -0.30
1.50 1.50 0.30 1.60 1.50 1.50 1.10 1.50 0.30 2.00 1.50 1.60 1.10 1.50 1.10 0.50
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.50 1.50 0.30 1.60 1.50 1.50 1.10 1.50 0.30 2.00 1.50 1.60 1.10 1.50 1.10 0.50
2.00 2.00 0.80 2.10 2.00 2.00 1.60 2.00 0.80 2.50 2.00 2.10 1.60 2.00 1.60 1.00
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.00 2.00 0.80 2.10 2.00 2.00 1.60 2.00 0.80 2.50 2.00 2.10 1.60 2.00 1.60 1.00
0.90 0.90 -0.30 1.00 0.90 0.90 0.50 0.90 -0.30 1.40 0.90 1.00 0.50 0.90 0.50 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
C \/ \_/ U
G /\ | A
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.70 1.20 0.00 2.00 1.20 1.90 1.70 1.20 1.70 0.20
2.00 2.00 0.80 2.70 2.00 2.00 2.50 2.00 0.80 2.80 2.00 2.70 2.50 2.00 2.50 1.00
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.70 1.20 0.00 2.00 1.20 1.90 1.70 1.20 1.70 0.20
2.00 2.00 0.80 2.70 2.00 2.00 2.50 2.00 0.80 2.80 2.00 2.70 2.50 2.00 2.50 1.00
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.00 2.00 0.80 2.70 2.00 2.00 2.50 2.00 0.80 2.80 2.00 2.70 2.50 2.00 2.50 1.00
2.50 2.50 1.30 3.20 2.50 2.50 3.00 2.50 1.30 3.30 2.50 3.20 3.00 2.50 3.00 1.50
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.50 2.50 1.30 3.20 2.50 2.50 3.00 2.50 1.30 3.30 2.50 3.20 3.00 2.50 3.00 1.50
1.40 1.40 0.20 2.10 1.40 1.40 1.90 1.40 0.20 2.20 1.40 2.10 1.90 1.40 1.90 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
C \/ \_/ G
G /\ | U
3' <------ 5'
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.00 2.00 0.80 3.20 2.00 2.00 2.60 2.00 0.80 3.20 2.00 3.20 2.60 2.00 2.60 1.00
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.00 2.00 0.80 3.20 2.00 2.00 2.60 2.00 0.80 3.20 2.00 3.20 2.60 2.00 2.60 1.00
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.00 2.00 0.80 3.20 2.00 2.00 2.60 2.00 0.80 3.20 2.00 3.20 2.60 2.00 2.60 1.00
2.50 2.50 1.30 3.70 2.50 2.50 3.10 2.50 1.30 3.70 2.50 3.70 3.10 2.50 3.10 1.50
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.50 2.50 1.30 3.70 2.50 2.50 3.10 2.50 1.30 3.70 2.50 3.70 3.10 2.50 3.10 1.50
1.40 1.40 0.20 2.60 1.40 1.40 2.00 1.40 0.20 2.60 1.40 2.60 2.00 1.40 2.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
C \/ \_/ U
G /\ | G
3' <------ 5'
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.50 1.50 0.30 2.20 1.50 1.50 1.50 1.50 0.30 2.40 1.50 2.20 1.70 1.50 1.50 0.50
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.50 1.50 0.30 2.20 1.50 1.50 1.50 1.50 0.30 2.40 1.50 2.20 1.70 1.50 1.50 0.50
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.50 1.50 0.30 2.20 1.50 1.50 1.50 1.50 0.30 2.40 1.50 2.20 1.70 1.50 1.50 0.50
2.00 2.00 0.80 2.70 2.00 2.00 2.00 2.00 0.80 2.90 2.00 2.70 2.20 2.00 2.00 1.00
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.00 2.00 0.80 2.70 2.00 2.00 2.00 2.00 0.80 2.90 2.00 2.70 2.20 2.00 2.00 1.00
0.90 0.90 -0.30 1.60 0.90 0.90 0.90 0.90 -0.30 1.80 0.90 1.60 1.10 0.90 0.90 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ A
C /\ | U
3' <------ 5'
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.60 2.60 1.40 3.80 2.60 2.60 3.20 2.60 1.40 3.80 2.60 3.80 3.20 2.60 3.20 1.60
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.30 3.30 2.10 4.50 3.30 3.30 3.90 3.30 2.10 4.50 3.30 4.50 3.90 3.30 3.90 2.30
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
1.40 1.40 0.20 2.60 1.40 1.40 2.00 1.40 0.20 2.60 1.40 2.60 2.00 1.40 2.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ C
C /\ | G
3' <------ 5'
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
2.10 2.10 0.90 2.80 2.10 2.10 2.10 2.10 0.90 3.00 2.10 2.80 2.30 2.10 2.10 1.10
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.80 2.80 1.60 3.50 2.80 2.80 2.80 2.80 1.60 3.70 2.80 3.50 3.00 2.80 2.80 1.80
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
0.90 0.90 -0.30 1.60 0.90 0.90 0.90 0.90 -0.30 1.80 0.90 1.60 1.10 0.90 0.90 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ G
C /\ | C
3' <------ 5'
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
0.70 0.70 -0.50 0.80 0.70 0.70 0.30 0.70 -0.50 1.20 0.70 0.80 0.30 0.70 0.30 -0.30
2.10 2.10 0.90 2.20 2.10 2.10 1.70 2.10 0.90 2.60 2.10 2.20 1.70 2.10 1.70 1.10
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.80 2.80 1.60 2.90 2.80 2.80 2.40 2.80 1.60 3.30 2.80 2.90 2.40 2.80 2.40 1.80
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
0.70 0.70 -0.50 0.80 0.70 0.70 0.30 0.70 -0.50 1.20 0.70 0.80 0.30 0.70 0.30 -0.30
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.60 2.60 1.40 2.70 2.60 2.60 2.20 2.60 1.40 3.10 2.60 2.70 2.20 2.60 2.20 1.60
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.60 2.60 1.40 2.70 2.60 2.60 2.20 2.60 1.40 3.10 2.60 2.70 2.20 2.60 2.20 1.60
0.90 0.90 -0.30 1.00 0.90 0.90 0.50 0.90 -0.30 1.40 0.90 1.00 0.50 0.90 0.50 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ U
C /\ | A
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.70 1.20 0.00 2.00 1.20 1.90 1.70 1.20 1.70 0.20
2.60 2.60 1.40 3.30 2.60 2.60 3.10 2.60 1.40 3.40 2.60 3.30 3.10 2.60 3.10 1.60
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
3.30 3.30 2.10 4.00 3.30 3.30 3.80 3.30 2.10 4.10 3.30 4.00 3.80 3.30 3.80 2.30
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.70 1.20 0.00 2.00 1.20 1.90 1.70 1.20 1.70 0.20
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
3.10 3.10 1.90 3.80 3.10 3.10 3.60 3.10 1.90 3.90 3.10 3.80 3.60 3.10 3.60 2.10
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
3.10 3.10 1.90 3.80 3.10 3.10 3.60 3.10 1.90 3.90 3.10 3.80 3.60 3.10 3.60 2.10
1.40 1.40 0.20 2.10 1.40 1.40 1.90 1.40 0.20 2.20 1.40 2.10 1.90 1.40 1.90 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ G
C /\ | U
3' <------ 5'
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.60 2.60 1.40 3.80 2.60 2.60 3.20 2.60 1.40 3.80 2.60 3.80 3.20 2.60 3.20 1.60
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.30 3.30 2.10 4.50 3.30 3.30 3.90 3.30 2.10 4.50 3.30 4.50 3.90 3.30 3.90 2.30
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
1.40 1.40 0.20 2.60 1.40 1.40 2.00 1.40 0.20 2.60 1.40 2.60 2.00 1.40 2.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ U
C /\ | G
3' <------ 5'
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
2.10 2.10 0.90 2.80 2.10 2.10 2.10 2.10 0.90 3.00 2.10 2.80 2.30 2.10 2.10 1.10
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.80 2.80 1.60 3.50 2.80 2.80 2.80 2.80 1.60 3.70 2.80 3.50 3.00 2.80 2.80 1.80
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
0.90 0.90 -0.30 1.60 0.90 0.90 0.90 0.90 -0.30 1.80 0.90 1.60 1.10 0.90 0.90 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ A
A /\ | U
3' <------ 5'
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
1.90 1.90 0.70 3.10 1.90 1.90 2.50 1.90 0.70 3.10 1.90 3.10 2.50 1.90 2.50 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ C
A /\ | G
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
1.40 1.40 0.20 2.10 1.40 1.40 1.40 1.40 0.20 2.30 1.40 2.10 1.60 1.40 1.40 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ G
A /\ | C
3' <------ 5'
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
1.20 1.20 0.00 1.30 1.20 1.20 0.80 1.20 0.00 1.70 1.20 1.30 0.80 1.20 0.80 0.20
3.00 3.00 1.80 3.10 3.00 3.00 2.60 3.00 1.80 3.50 3.00 3.10 2.60 3.00 2.60 2.00
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.60 3.60 2.40 3.70 3.60 3.60 3.20 3.60 2.40 4.10 3.60 3.70 3.20 3.60 3.20 2.60
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
1.20 1.20 0.00 1.30 1.20 1.20 0.80 1.20 0.00 1.70 1.20 1.30 0.80 1.20 0.80 0.20
3.00 3.00 1.80 3.10 3.00 3.00 2.60 3.00 1.80 3.50 3.00 3.10 2.60 3.00 2.60 2.00
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.00 3.00 1.80 3.10 3.00 3.00 2.60 3.00 1.80 3.50 3.00 3.10 2.60 3.00 2.60 2.00
3.60 3.60 2.40 3.70 3.60 3.60 3.20 3.60 2.40 4.10 3.60 3.70 3.20 3.60 3.20 2.60
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.60 3.60 2.40 3.70 3.60 3.60 3.20 3.60 2.40 4.10 3.60 3.70 3.20 3.60 3.20 2.60
1.40 1.40 0.20 1.50 1.40 1.40 1.00 1.40 0.20 1.90 1.40 1.50 1.00 1.40 1.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ U
A /\ | A
3' <------ 5'
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
1.70 1.70 0.50 2.40 1.70 1.70 2.20 1.70 0.50 2.50 1.70 2.40 2.20 1.70 2.20 0.70
3.50 3.50 2.30 4.20 3.50 3.50 4.00 3.50 2.30 4.30 3.50 4.20 4.00 3.50 4.00 2.50
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
4.10 4.10 2.90 4.80 4.10 4.10 4.60 4.10 2.90 4.90 4.10 4.80 4.60 4.10 4.60 3.10
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
1.70 1.70 0.50 2.40 1.70 1.70 2.20 1.70 0.50 2.50 1.70 2.40 2.20 1.70 2.20 0.70
3.50 3.50 2.30 4.20 3.50 3.50 4.00 3.50 2.30 4.30 3.50 4.20 4.00 3.50 4.00 2.50
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
3.50 3.50 2.30 4.20 3.50 3.50 4.00 3.50 2.30 4.30 3.50 4.20 4.00 3.50 4.00 2.50
4.10 4.10 2.90 4.80 4.10 4.10 4.60 4.10 2.90 4.90 4.10 4.80 4.60 4.10 4.60 3.10
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
4.10 4.10 2.90 4.80 4.10 4.10 4.60 4.10 2.90 4.90 4.10 4.80 4.60 4.10 4.60 3.10
1.90 1.90 0.70 2.60 1.90 1.90 2.40 1.90 0.70 2.70 1.90 2.60 2.40 1.90 2.40 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ G
A /\ | U
3' <------ 5'
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
1.90 1.90 0.70 3.10 1.90 1.90 2.50 1.90 0.70 3.10 1.90 3.10 2.50 1.90 2.50 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ U
A /\ | G
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
1.40 1.40 0.20 2.10 1.40 1.40 1.40 1.40 0.20 2.30 1.40 2.10 1.60 1.40 1.40 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ A
U /\ | U
3' <------ 5'
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.60 2.60 1.40 3.80 2.60 2.60 3.20 2.60 1.40 3.80 2.60 3.80 3.20 2.60 3.20 1.60
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.30 3.30 2.10 4.50 3.30 3.30 3.90 3.30 2.10 4.50 3.30 4.50 3.90 3.30 3.90 2.30
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
1.40 1.40 0.20 2.60 1.40 1.40 2.00 1.40 0.20 2.60 1.40 2.60 2.00 1.40 2.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ C
U /\ | G
3' <------ 5'
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
2.10 2.10 0.90 2.80 2.10 2.10 2.10 2.10 0.90 3.00 2.10 2.80 2.30 2.10 2.10 1.10
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.80 2.80 1.60 3.50 2.80 2.80 2.80 2.80 1.60 3.70 2.80 3.50 3.00 2.80 2.80 1.80
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
0.90 0.90 -0.30 1.60 0.90 0.90 0.90 0.90 -0.30 1.80 0.90 1.60 1.10 0.90 0.90 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ G
U /\ | C
3' <------ 5'
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
0.70 0.70 -0.50 0.80 0.70 0.70 0.30 0.70 -0.50 1.20 0.70 0.80 0.30 0.70 0.30 -0.30
2.10 2.10 0.90 2.20 2.10 2.10 1.70 2.10 0.90 2.60 2.10 2.20 1.70 2.10 1.70 1.10
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.80 2.80 1.60 2.90 2.80 2.80 2.40 2.80 1.60 3.30 2.80 2.90 2.40 2.80 2.40 1.80
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
0.70 0.70 -0.50 0.80 0.70 0.70 0.30 0.70 -0.50 1.20 0.70 0.80 0.30 0.70 0.30 -0.30
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.60 2.60 1.40 2.70 2.60 2.60 2.20 2.60 1.40 3.10 2.60 2.70 2.20 2.60 2.20 1.60
1.90 1.90 0.70 2.00 1.90 1.90 1.50 1.90 0.70 2.40 1.90 2.00 1.50 1.90 1.50 0.90
2.60 2.60 1.40 2.70 2.60 2.60 2.20 2.60 1.40 3.10 2.60 2.70 2.20 2.60 2.20 1.60
0.90 0.90 -0.30 1.00 0.90 0.90 0.50 0.90 -0.30 1.40 0.90 1.00 0.50 0.90 0.50 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ U
U /\ | A
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.70 1.20 0.00 2.00 1.20 1.90 1.70 1.20 1.70 0.20
2.60 2.60 1.40 3.30 2.60 2.60 3.10 2.60 1.40 3.40 2.60 3.30 3.10 2.60 3.10 1.60
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
3.30 3.30 2.10 4.00 3.30 3.30 3.80 3.30 2.10 4.10 3.30 4.00 3.80 3.30 3.80 2.30
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.70 1.20 0.00 2.00 1.20 1.90 1.70 1.20 1.70 0.20
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
3.10 3.10 1.90 3.80 3.10 3.10 3.60 3.10 1.90 3.90 3.10 3.80 3.60 3.10 3.60 2.10
2.40 2.40 1.20 3.10 2.40 2.40 2.90 2.40 1.20 3.20 2.40 3.10 2.90 2.40 2.90 1.40
3.10 3.10 1.90 3.80 3.10 3.10 3.60 3.10 1.90 3.90 3.10 3.80 3.60 3.10 3.60 2.10
1.40 1.40 0.20 2.10 1.40 1.40 1.90 1.40 0.20 2.20 1.40 2.10 1.90 1.40 1.90 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ G
U /\ | U
3' <------ 5'
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.60 2.60 1.40 3.80 2.60 2.60 3.20 2.60 1.40 3.80 2.60 3.80 3.20 2.60 3.20 1.60
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.30 3.30 2.10 4.50 3.30 3.30 3.90 3.30 2.10 4.50 3.30 4.50 3.90 3.30 3.90 2.30
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
1.20 1.20 0.00 2.40 1.20 1.20 1.80 1.20 0.00 2.40 1.20 2.40 1.80 1.20 1.80 0.20
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
2.40 2.40 1.20 3.60 2.40 2.40 3.00 2.40 1.20 3.60 2.40 3.60 3.00 2.40 3.00 1.40
3.10 3.10 1.90 4.30 3.10 3.10 3.70 3.10 1.90 4.30 3.10 4.30 3.70 3.10 3.70 2.10
1.40 1.40 0.20 2.60 1.40 1.40 2.00 1.40 0.20 2.60 1.40 2.60 2.00 1.40 2.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
G \/ \_/ U
U /\ | G
3' <------ 5'
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
2.10 2.10 0.90 2.80 2.10 2.10 2.10 2.10 0.90 3.00 2.10 2.80 2.30 2.10 2.10 1.10
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.80 2.80 1.60 3.50 2.80 2.80 2.80 2.80 1.60 3.70 2.80 3.50 3.00 2.80 2.80 1.80
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
0.70 0.70 -0.50 1.40 0.70 0.70 0.70 0.70 -0.50 1.60 0.70 1.40 0.90 0.70 0.70 -0.30
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
1.90 1.90 0.70 2.60 1.90 1.90 1.90 1.90 0.70 2.80 1.90 2.60 2.10 1.90 1.90 0.90
2.60 2.60 1.40 3.30 2.60 2.60 2.60 2.60 1.40 3.50 2.60 3.30 2.80 2.60 2.60 1.60
0.90 0.90 -0.30 1.60 0.90 0.90 0.90 0.90 -0.30 1.80 0.90 1.60 1.10 0.90 0.90 -0.10
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ A
G /\ | U
3' <------ 5'
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
1.90 1.90 0.70 3.10 1.90 1.90 2.50 1.90 0.70 3.10 1.90 3.10 2.50 1.90 2.50 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ C
G /\ | G
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
1.40 1.40 0.20 2.10 1.40 1.40 1.40 1.40 0.20 2.30 1.40 2.10 1.60 1.40 1.40 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ G
G /\ | C
3' <------ 5'
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
1.20 1.20 0.00 1.30 1.20 1.20 0.80 1.20 0.00 1.70 1.20 1.30 0.80 1.20 0.80 0.20
3.00 3.00 1.80 3.10 3.00 3.00 2.60 3.00 1.80 3.50 3.00 3.10 2.60 3.00 2.60 2.00
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.60 3.60 2.40 3.70 3.60 3.60 3.20 3.60 2.40 4.10 3.60 3.70 3.20 3.60 3.20 2.60
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
1.20 1.20 0.00 1.30 1.20 1.20 0.80 1.20 0.00 1.70 1.20 1.30 0.80 1.20 0.80 0.20
3.00 3.00 1.80 3.10 3.00 3.00 2.60 3.00 1.80 3.50 3.00 3.10 2.60 3.00 2.60 2.00
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.00 3.00 1.80 3.10 3.00 3.00 2.60 3.00 1.80 3.50 3.00 3.10 2.60 3.00 2.60 2.00
3.60 3.60 2.40 3.70 3.60 3.60 3.20 3.60 2.40 4.10 3.60 3.70 3.20 3.60 3.20 2.60
2.40 2.40 1.20 2.50 2.40 2.40 2.00 2.40 1.20 2.90 2.40 2.50 2.00 2.40 2.00 1.40
3.60 3.60 2.40 3.70 3.60 3.60 3.20 3.60 2.40 4.10 3.60 3.70 3.20 3.60 3.20 2.60
1.40 1.40 0.20 1.50 1.40 1.40 1.00 1.40 0.20 1.90 1.40 1.50 1.00 1.40 1.00 0.40
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ U
G /\ | A
3' <------ 5'
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
1.70 1.70 0.50 2.40 1.70 1.70 2.20 1.70 0.50 2.50 1.70 2.40 2.20 1.70 2.20 0.70
3.50 3.50 2.30 4.20 3.50 3.50 4.00 3.50 2.30 4.30 3.50 4.20 4.00 3.50 4.00 2.50
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
4.10 4.10 2.90 4.80 4.10 4.10 4.60 4.10 2.90 4.90 4.10 4.80 4.60 4.10 4.60 3.10
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
1.70 1.70 0.50 2.40 1.70 1.70 2.20 1.70 0.50 2.50 1.70 2.40 2.20 1.70 2.20 0.70
3.50 3.50 2.30 4.20 3.50 3.50 4.00 3.50 2.30 4.30 3.50 4.20 4.00 3.50 4.00 2.50
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
3.50 3.50 2.30 4.20 3.50 3.50 4.00 3.50 2.30 4.30 3.50 4.20 4.00 3.50 4.00 2.50
4.10 4.10 2.90 4.80 4.10 4.10 4.60 4.10 2.90 4.90 4.10 4.80 4.60 4.10 4.60 3.10
2.90 2.90 1.70 3.60 2.90 2.90 3.40 2.90 1.70 3.70 2.90 3.60 3.40 2.90 3.40 1.90
4.10 4.10 2.90 4.80 4.10 4.10 4.60 4.10 2.90 4.90 4.10 4.80 4.60 4.10 4.60 3.10
1.90 1.90 0.70 2.60 1.90 1.90 2.40 1.90 0.70 2.70 1.90 2.60 2.40 1.90 2.40 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ G
G /\ | U
3' <------ 5'
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
1.70 1.70 0.50 2.90 1.70 1.70 2.30 1.70 0.50 2.90 1.70 2.90 2.30 1.70 2.30 0.70
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
3.50 3.50 2.30 4.70 3.50 3.50 4.10 3.50 2.30 4.70 3.50 4.70 4.10 3.50 4.10 2.50
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
2.90 2.90 1.70 4.10 2.90 2.90 3.50 2.90 1.70 4.10 2.90 4.10 3.50 2.90 3.50 1.90
4.10 4.10 2.90 5.30 4.10 4.10 4.70 4.10 2.90 5.30 4.10 5.30 4.70 4.10 4.70 3.10
1.90 1.90 0.70 3.10 1.90 1.90 2.50 1.90 0.70 3.10 1.90 3.10 2.50 1.90 2.50 0.90
Y
---------------------------------------------------------------------------------------------
A A A A C C C C G G G G U U U U
A C G U A C G U A C G U A C G U
---------------------------------------------------------------------------------------------
5' ------> 3'
U \/ \_/ U
G /\ | G
3' <------ 5'
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
1.20 1.20 0.00 1.90 1.20 1.20 1.20 1.20 0.00 2.10 1.20 1.90 1.40 1.20 1.20 0.20
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.00 3.00 1.80 3.70 3.00 3.00 3.00 3.00 1.80 3.90 3.00 3.70 3.20 3.00 3.00 2.00
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
2.40 2.40 1.20 3.10 2.40 2.40 2.40 2.40 1.20 3.30 2.40 3.10 2.60 2.40 2.40 1.40
3.60 3.60 2.40 4.30 3.60 3.60 3.60 3.60 2.40 4.50 3.60 4.30 3.80 3.60 3.60 2.60
1.40 1.40 0.20 2.10 1.40 1.40 1.40 1.40 0.20 2.30 1.40 2.10 1.60 1.40 1.40 0.40
Data arrangement:
Y
------------------
(X) A C G U
------------------
5' --> 3'
X
A A
U U
YA
3' <-- 5'
(A) . . . .
(C) . . . .
(G) . . . .
(U) . . . .
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
A A A C A G A U A G A U
U U U G U C U A U U U G
YA YA YA YA YA YA
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
3.40 3.40 2.20 3.90 2.90 2.90 1.70 3.40 2.90 2.90 1.70 3.40 3.40 3.40 2.20 3.90 3.40 3.40 2.20 3.90 2.90 2.90 1.70 3.40
3.40 3.40 4.20 3.40 2.90 2.90 3.70 2.90 2.90 2.90 3.70 2.90 3.40 3.40 4.20 3.40 3.40 3.40 4.20 3.40 2.90 2.90 3.70 2.90
1.00 2.70 2.20 2.70 0.50 2.20 1.70 2.20 0.50 2.20 1.70 2.20 1.00 2.70 2.20 2.70 1.00 2.70 2.20 2.70 0.50 2.20 1.70 2.20
4.70 4.00 4.70 3.00 3.80 3.10 3.80 2.10 3.20 2.50 3.20 1.50 4.60 3.90 4.60 2.90 4.70 4.00 4.70 3.00 3.80 3.10 3.80 2.10
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
A A A C A G A U A G A U
U U U G U C U A U U U G
YC YC YC YC YC YC
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
3.40 3.40 2.20 3.90 2.90 2.90 1.70 3.40 2.90 2.90 1.70 3.40 3.40 3.40 2.20 3.90 3.40 3.40 2.20 3.90 2.90 2.90 1.70 3.40
3.40 3.40 4.20 3.40 2.90 2.90 3.70 2.90 2.90 2.90 3.70 2.90 3.40 3.40 4.20 3.40 3.40 3.40 4.20 3.40 2.90 2.90 3.70 2.90
3.40 5.10 4.60 5.10 2.60 4.30 3.80 4.30 2.20 3.90 3.40 3.90 3.00 4.70 4.20 4.70 3.40 5.10 4.60 5.10 2.60 4.30 3.80 4.30
4.10 3.40 4.10 2.40 3.60 2.90 3.60 1.90 3.60 2.90 3.60 1.90 4.10 3.40 4.10 2.40 4.10 3.40 4.10 2.40 3.60 2.90 3.60 1.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
A A A C A G A U A G A U
U U U G U C U A U U U G
YG YG YG YG YG YG
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.20 2.20 1.00 2.70 1.70 1.70 0.50 2.20 1.70 1.70 0.50 2.20 2.20 2.20 1.00 2.70 2.20 2.20 1.00 2.70 1.70 1.70 0.50 2.20
4.00 4.00 4.80 4.00 2.90 2.90 3.70 2.90 2.50 2.50 3.30 2.50 3.90 3.90 4.70 3.90 4.00 4.00 4.80 4.00 2.90 2.90 3.70 2.90
2.20 3.90 3.40 3.90 1.70 3.40 2.90 3.40 1.70 3.40 2.90 3.40 2.20 3.90 3.40 3.90 2.20 3.90 3.40 3.90 1.70 3.40 2.90 3.40
4.70 4.00 4.70 3.00 3.60 2.90 3.60 1.90 3.20 2.50 3.20 1.50 4.60 3.90 4.60 2.90 4.70 4.00 4.70 3.00 3.60 2.90 3.60 1.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
A A A C A G A U A G A U
U U U G U C U A U U U G
YU YU YU YU YU YU
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
4.60 4.60 3.40 5.10 3.60 3.60 2.40 4.10 3.00 3.00 1.80 3.50 4.10 4.10 2.90 4.60 4.60 4.60 3.40 5.10 3.60 3.60 2.40 4.10
3.40 3.40 4.20 3.40 2.90 2.90 3.70 2.90 2.90 2.90 3.70 2.90 3.40 3.40 4.20 3.40 3.40 3.40 4.20 3.40 2.90 2.90 3.70 2.90
3.40 5.10 4.60 5.10 2.40 4.10 3.60 4.10 1.80 3.50 3.00 3.50 2.90 4.60 4.10 4.60 3.40 5.10 4.60 5.10 2.40 4.10 3.60 4.10
3.10 2.40 3.10 1.40 2.60 1.90 2.60 0.90 2.60 1.90 2.60 0.90 3.10 2.40 3.10 1.40 3.10 2.40 3.10 1.40 2.60 1.90 2.60 0.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
C A C C C G C U C G C U
G U G G G C G A G U G G
YA YA YA YA YA YA
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.90 2.90 1.70 2.50 2.40 2.40 1.20 2.00 2.40 2.40 1.20 2.00 2.90 2.90 1.70 2.50 2.90 2.90 1.70 2.50 2.40 2.40 1.20 2.00
2.90 2.90 3.40 2.90 2.40 2.40 2.90 2.40 2.40 2.40 2.90 2.40 2.90 2.90 3.40 2.90 2.90 2.90 3.40 2.90 2.40 2.40 2.90 2.40
0.50 1.30 1.70 1.30 0.00 0.80 1.20 0.80 0.00 0.80 1.20 0.80 0.50 1.30 1.70 1.30 0.50 1.30 1.70 1.30 0.00 0.80 1.20 0.80
3.60 3.50 3.60 2.50 2.70 2.60 2.70 1.60 2.10 2.00 2.10 1.00 3.50 3.40 3.50 2.40 3.60 3.50 3.60 2.50 2.70 2.60 2.70 1.60
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
C A C C C G C U C G C U
G U G G G C G A G U G G
YC YC YC YC YC YC
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.90 2.90 1.70 2.50 2.40 2.40 1.20 2.00 2.40 2.40 1.20 2.00 2.90 2.90 1.70 2.50 2.90 2.90 1.70 2.50 2.40 2.40 1.20 2.00
2.90 2.90 3.40 2.90 2.40 2.40 2.90 2.40 2.40 2.40 2.90 2.40 2.90 2.90 3.40 2.90 2.90 2.90 3.40 2.90 2.40 2.40 2.90 2.40
2.90 3.70 4.10 3.70 2.10 2.90 3.30 2.90 1.70 2.50 2.90 2.50 2.50 3.30 3.70 3.30 2.90 3.70 4.10 3.70 2.10 2.90 3.30 2.90
3.00 2.90 3.00 1.90 2.50 2.40 2.50 1.40 2.50 2.40 2.50 1.40 3.00 2.90 3.00 1.90 3.00 2.90 3.00 1.90 2.50 2.40 2.50 1.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
C A C C C G C U C G C U
G U G G G C G A G U G G
YG YG YG YG YG YG
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.70 1.70 0.50 1.30 1.20 1.20 0.00 0.80 1.20 1.20 0.00 0.80 1.70 1.70 0.50 1.30 1.70 1.70 0.50 1.30 1.20 1.20 0.00 0.80
3.50 3.50 4.00 3.50 2.40 2.40 2.90 2.40 2.00 2.00 2.50 2.00 3.40 3.40 3.90 3.40 3.50 3.50 4.00 3.50 2.40 2.40 2.90 2.40
1.70 2.50 2.90 2.50 1.20 2.00 2.40 2.00 1.20 2.00 2.40 2.00 1.70 2.50 2.90 2.50 1.70 2.50 2.90 2.50 1.20 2.00 2.40 2.00
3.60 3.50 3.60 2.50 2.50 2.40 2.50 1.40 2.10 2.00 2.10 1.00 3.50 3.40 3.50 2.40 3.60 3.50 3.60 2.50 2.50 2.40 2.50 1.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
C A C C C G C U C G C U
G U G G G C G A G U G G
YU YU YU YU YU YU
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
4.10 4.10 2.90 3.70 3.10 3.10 1.90 2.70 2.50 2.50 1.30 2.10 3.60 3.60 2.40 3.20 4.10 4.10 2.90 3.70 3.10 3.10 1.90 2.70
2.90 2.90 3.40 2.90 2.40 2.40 2.90 2.40 2.40 2.40 2.90 2.40 2.90 2.90 3.40 2.90 2.90 2.90 3.40 2.90 2.40 2.40 2.90 2.40
2.90 3.70 4.10 3.70 1.90 2.70 3.10 2.70 1.30 2.10 2.50 2.10 2.40 3.20 3.60 3.20 2.90 3.70 4.10 3.70 1.90 2.70 3.10 2.70
2.00 1.90 2.00 0.90 1.50 1.40 1.50 0.40 1.50 1.40 1.50 0.40 2.00 1.90 2.00 0.90 2.00 1.90 2.00 0.90 1.50 1.40 1.50 0.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
C U C G C C C A C U C G
YA YA YA YA YA YA
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60 2.40 2.40 1.20 2.60 2.90 2.90 1.70 3.10 2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60
2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40 2.40 2.40 3.30 2.40 2.90 2.90 3.80 2.90 2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40
0.50 1.70 1.70 1.70 0.00 1.20 1.20 1.20 0.00 1.20 1.20 1.20 0.50 1.70 1.70 1.70 0.50 1.70 1.70 1.70 0.00 1.20 1.20 1.20
4.20 3.50 4.20 2.50 3.30 2.60 3.30 1.60 2.70 2.00 2.70 1.00 4.10 3.40 4.10 2.40 4.20 3.50 4.20 2.50 3.30 2.60 3.30 1.60
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
C U C G C C C A C U C G
YC YC YC YC YC YC
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60 2.40 2.40 1.20 2.60 2.90 2.90 1.70 3.10 2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60
2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40 2.40 2.40 3.30 2.40 2.90 2.90 3.80 2.90 2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40
2.90 4.10 4.10 4.10 2.10 3.30 3.30 3.30 1.70 2.90 2.90 2.90 2.50 3.70 3.70 3.70 2.90 4.10 4.10 4.10 2.10 3.30 3.30 3.30
3.60 2.90 3.60 1.90 3.10 2.40 3.10 1.40 3.10 2.40 3.10 1.40 3.60 2.90 3.60 1.90 3.60 2.90 3.60 1.90 3.10 2.40 3.10 1.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
C U C G C C C A C U C G
YG YG YG YG YG YG
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.70 1.70 0.50 1.90 1.20 1.20 0.00 1.40 1.20 1.20 0.00 1.40 1.70 1.70 0.50 1.90 1.70 1.70 0.50 1.90 1.20 1.20 0.00 1.40
3.50 3.50 4.40 3.50 2.40 2.40 3.30 2.40 2.00 2.00 2.90 2.00 3.40 3.40 4.30 3.40 3.50 3.50 4.40 3.50 2.40 2.40 3.30 2.40
1.70 2.90 2.90 2.90 1.20 2.40 2.40 2.40 1.20 2.40 2.40 2.40 1.70 2.90 2.90 2.90 1.70 2.90 2.90 2.90 1.20 2.40 2.40 2.40
4.20 3.50 4.20 2.50 3.10 2.40 3.10 1.40 2.70 2.00 2.70 1.00 4.10 3.40 4.10 2.40 4.20 3.50 4.20 2.50 3.10 2.40 3.10 1.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
C U C G C C C A C U C G
YU YU YU YU YU YU
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
4.10 4.10 2.90 4.30 3.10 3.10 1.90 3.30 2.50 2.50 1.30 2.70 3.60 3.60 2.40 3.80 4.10 4.10 2.90 4.30 3.10 3.10 1.90 3.30
2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40 2.40 2.40 3.30 2.40 2.90 2.90 3.80 2.90 2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40
2.90 4.10 4.10 4.10 1.90 3.10 3.10 3.10 1.30 2.50 2.50 2.50 2.40 3.60 3.60 3.60 2.90 4.10 4.10 4.10 1.90 3.10 3.10 3.10
2.60 1.90 2.60 0.90 2.10 1.40 2.10 0.40 2.10 1.40 2.10 0.40 2.60 1.90 2.60 0.90 2.60 1.90 2.60 0.90 2.10 1.40 2.10 0.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
A U A G A C A A A U A G
YA YA YA YA YA YA
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50 2.90 2.90 1.70 3.50 3.40 3.40 2.20 4.00 3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50
3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90 2.90 2.90 4.10 2.90 3.40 3.40 4.60 3.40 3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90
1.00 2.80 2.20 2.80 0.50 2.30 1.70 2.30 0.50 2.30 1.70 2.30 1.00 2.80 2.20 2.80 1.00 2.80 2.20 2.80 0.50 2.30 1.70 2.30
5.20 4.00 5.20 3.00 4.30 3.10 4.30 2.10 3.70 2.50 3.70 1.50 5.10 3.90 5.10 2.90 5.20 4.00 5.20 3.00 4.30 3.10 4.30 2.10
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
A U A G A C A A A U A G
YC YC YC YC YC YC
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50 2.90 2.90 1.70 3.50 3.40 3.40 2.20 4.00 3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50
3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90 2.90 2.90 4.10 2.90 3.40 3.40 4.60 3.40 3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90
3.40 5.20 4.60 5.20 2.60 4.40 3.80 4.40 2.20 4.00 3.40 4.00 3.00 4.80 4.20 4.80 3.40 5.20 4.60 5.20 2.60 4.40 3.80 4.40
4.60 3.40 4.60 2.40 4.10 2.90 4.10 1.90 4.10 2.90 4.10 1.90 4.60 3.40 4.60 2.40 4.60 3.40 4.60 2.40 4.10 2.90 4.10 1.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
A U A G A C A A A U A G
YG YG YG YG YG YG
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.20 2.20 1.00 2.80 1.70 1.70 0.50 2.30 1.70 1.70 0.50 2.30 2.20 2.20 1.00 2.80 2.20 2.20 1.00 2.80 1.70 1.70 0.50 2.30
4.00 4.00 5.20 4.00 2.90 2.90 4.10 2.90 2.50 2.50 3.70 2.50 3.90 3.90 5.10 3.90 4.00 4.00 5.20 4.00 2.90 2.90 4.10 2.90
2.20 4.00 3.40 4.00 1.70 3.50 2.90 3.50 1.70 3.50 2.90 3.50 2.20 4.00 3.40 4.00 2.20 4.00 3.40 4.00 1.70 3.50 2.90 3.50
5.20 4.00 5.20 3.00 4.10 2.90 4.10 1.90 3.70 2.50 3.70 1.50 5.10 3.90 5.10 2.90 5.20 4.00 5.20 3.00 4.10 2.90 4.10 1.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
A U A G A C A A A U A G
YU YU YU YU YU YU
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
4.60 4.60 3.40 5.20 3.60 3.60 2.40 4.20 3.00 3.00 1.80 3.60 4.10 4.10 2.90 4.70 4.60 4.60 3.40 5.20 3.60 3.60 2.40 4.20
3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90 2.90 2.90 4.10 2.90 3.40 3.40 4.60 3.40 3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90
3.40 5.20 4.60 5.20 2.40 4.20 3.60 4.20 1.80 3.60 3.00 3.60 2.90 4.70 4.10 4.70 3.40 5.20 4.60 5.20 2.40 4.20 3.60 4.20
3.60 2.40 3.60 1.40 3.10 1.90 3.10 0.90 3.10 1.90 3.10 0.90 3.60 2.40 3.60 1.40 3.60 2.40 3.60 1.40 3.10 1.90 3.10 0.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
U U U G U C U A U U U G
YA YA YA YA YA YA
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60 2.40 2.40 1.20 2.60 2.90 2.90 1.70 3.10 2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60
2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40 2.40 2.40 3.30 2.40 2.90 2.90 3.80 2.90 2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40
0.50 1.70 1.70 1.70 0.00 1.20 1.20 1.20 0.00 1.20 1.20 1.20 0.50 1.70 1.70 1.70 0.50 1.70 1.70 1.70 0.00 1.20 1.20 1.20
4.20 3.50 4.20 2.50 3.30 2.60 3.30 1.60 2.70 2.00 2.70 1.00 4.10 3.40 4.10 2.40 4.20 3.50 4.20 2.50 3.30 2.60 3.30 1.60
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
U U U G U C U A U U U G
YC YC YC YC YC YC
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60 2.40 2.40 1.20 2.60 2.90 2.90 1.70 3.10 2.90 2.90 1.70 3.10 2.40 2.40 1.20 2.60
2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40 2.40 2.40 3.30 2.40 2.90 2.90 3.80 2.90 2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40
2.90 4.10 4.10 4.10 2.10 3.30 3.30 3.30 1.70 2.90 2.90 2.90 2.50 3.70 3.70 3.70 2.90 4.10 4.10 4.10 2.10 3.30 3.30 3.30
3.60 2.90 3.60 1.90 3.10 2.40 3.10 1.40 3.10 2.40 3.10 1.40 3.60 2.90 3.60 1.90 3.60 2.90 3.60 1.90 3.10 2.40 3.10 1.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
U U U G U C U A U U U G
YG YG YG YG YG YG
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
1.70 1.70 0.50 1.90 1.20 1.20 0.00 1.40 1.20 1.20 0.00 1.40 1.70 1.70 0.50 1.90 1.70 1.70 0.50 1.90 1.20 1.20 0.00 1.40
3.50 3.50 4.40 3.50 2.40 2.40 3.30 2.40 2.00 2.00 2.90 2.00 3.40 3.40 4.30 3.40 3.50 3.50 4.40 3.50 2.40 2.40 3.30 2.40
1.70 2.90 2.90 2.90 1.20 2.40 2.40 2.40 1.20 2.40 2.40 2.40 1.70 2.90 2.90 2.90 1.70 2.90 2.90 2.90 1.20 2.40 2.40 2.40
4.20 3.50 4.20 2.50 3.10 2.40 3.10 1.40 2.70 2.00 2.70 1.00 4.10 3.40 4.10 2.40 4.20 3.50 4.20 2.50 3.10 2.40 3.10 1.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
G A G C G G G U G G G U
U U U G U C U A U U U G
YU YU YU YU YU YU
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
4.10 4.10 2.90 4.30 3.10 3.10 1.90 3.30 2.50 2.50 1.30 2.70 3.60 3.60 2.40 3.80 4.10 4.10 2.90 4.30 3.10 3.10 1.90 3.30
2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40 2.40 2.40 3.30 2.40 2.90 2.90 3.80 2.90 2.90 2.90 3.80 2.90 2.40 2.40 3.30 2.40
2.90 4.10 4.10 4.10 1.90 3.10 3.10 3.10 1.30 2.50 2.50 2.50 2.40 3.60 3.60 3.60 2.90 4.10 4.10 4.10 1.90 3.10 3.10 3.10
2.60 1.90 2.60 0.90 2.10 1.40 2.10 0.40 2.10 1.40 2.10 0.40 2.60 1.90 2.60 0.90 2.60 1.90 2.60 0.90 2.10 1.40 2.10 0.40
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
G U G G G C G A G U G G
YA YA YA YA YA YA
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50 2.90 2.90 1.70 3.50 3.40 3.40 2.20 4.00 3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50
3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90 2.90 2.90 4.10 2.90 3.40 3.40 4.60 3.40 3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90
1.00 2.80 2.20 2.80 0.50 2.30 1.70 2.30 0.50 2.30 1.70 2.30 1.00 2.80 2.20 2.80 1.00 2.80 2.20 2.80 0.50 2.30 1.70 2.30
5.20 4.00 5.20 3.00 4.30 3.10 4.30 2.10 3.70 2.50 3.70 1.50 5.10 3.90 5.10 2.90 5.20 4.00 5.20 3.00 4.30 3.10 4.30 2.10
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
G U G G G C G A G U G G
YC YC YC YC YC YC
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50 2.90 2.90 1.70 3.50 3.40 3.40 2.20 4.00 3.40 3.40 2.20 4.00 2.90 2.90 1.70 3.50
3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90 2.90 2.90 4.10 2.90 3.40 3.40 4.60 3.40 3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90
3.40 5.20 4.60 5.20 2.60 4.40 3.80 4.40 2.20 4.00 3.40 4.00 3.00 4.80 4.20 4.80 3.40 5.20 4.60 5.20 2.60 4.40 3.80 4.40
4.60 3.40 4.60 2.40 4.10 2.90 4.10 1.90 4.10 2.90 4.10 1.90 4.60 3.40 4.60 2.40 4.60 3.40 4.60 2.40 4.10 2.90 4.10 1.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
G U G G G C G A G U G G
YG YG YG YG YG YG
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
2.20 2.20 1.00 2.80 1.70 1.70 0.50 2.30 1.70 1.70 0.50 2.30 2.20 2.20 1.00 2.80 2.20 2.20 1.00 2.80 1.70 1.70 0.50 2.30
4.00 4.00 5.20 4.00 2.90 2.90 4.10 2.90 2.50 2.50 3.70 2.50 3.90 3.90 5.10 3.90 4.00 4.00 5.20 4.00 2.90 2.90 4.10 2.90
2.20 4.00 3.40 4.00 1.70 3.50 2.90 3.50 1.70 3.50 2.90 3.50 2.20 4.00 3.40 4.00 2.20 4.00 3.40 4.00 1.70 3.50 2.90 3.50
5.20 4.00 5.20 3.00 4.10 2.90 4.10 1.90 3.70 2.50 3.70 1.50 5.10 3.90 5.10 2.90 5.20 4.00 5.20 3.00 4.10 2.90 4.10 1.90
Y Y Y Y Y Y
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
A C G U A C G U A C G U A C G U A C G U A C G U
------------------ ------------------ ------------------ ------------------ ------------------ ------------------
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3'
X X X X X X
U A U C U G U U U G U U
G U G G G C G A G U G G
YU YU YU YU YU YU
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5'
4.60 4.60 3.40 5.20 3.60 3.60 2.40 4.20 3.00 3.00 1.80 3.60 4.10 4.10 2.90 4.70 4.60 4.60 3.40 5.20 3.60 3.60 2.40 4.20
3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90 2.90 2.90 4.10 2.90 3.40 3.40 4.60 3.40 3.40 3.40 4.60 3.40 2.90 2.90 4.10 2.90
3.40 5.20 4.60 5.20 2.40 4.20 3.60 4.20 1.80 3.60 3.00 3.60 2.90 4.70 4.10 4.70 3.40 5.20 4.60 5.20 2.40 4.20 3.60 4.20
3.60 2.40 3.60 1.40 3.10 1.90 3.10 0.90 3.10 1.90 3.10 0.90 3.60 2.40 3.60 1.40 3.60 2.40 3.60 1.40 3.10 1.90 3.10 0.90
Seq Energy ----------- AGAAAU -2.00 AGCAAU -2.00 AGAGAU -2.00 AGUGAU -2.00 AGGAAU -2.00 AUUCGU -2.00 AUACGU -2.00 AGCGAU -2.00 AUCCGU -2.00 AGUAAU -2.00 ACUUGU -2.00 AAUUUU -2.00 AUUUAU -2.00 CGAAAG -2.00 CGCAAG -2.00 CGAGAG -2.00 CGUGAG -2.00 CGGAAG -2.00 CUUCGG -2.00 CUACGG -2.00 CGCGAG -2.00 CUCCGG -2.00 CGUAAG -2.00 CCUUGG -2.00 CAUUUG -2.00 CUUUAG -2.00 GGAAAC -2.00 GGCAAC -2.00 GGAGAC -2.00 GGUGAC -2.00 GGGAAC -2.00 GUUCGC -2.00 GUACGC -2.00 GGCGAC -2.00 GUCCGC -2.00 GGUAAC -2.00 GCUUGC -2.00 GAUUUC -2.00 GUUUAC -2.00 UGAAAA -2.00 UGCAAA -2.00 UGAGAA -2.00 UGUGAA -2.00 UGGAAA -2.00 UUUCGA -2.00 UUACGA -2.00 UGCGAA -2.00 UUCCGA -2.00 UGUAAA -2.00 UCUUGA -2.00 UAUUUA -2.00 UUUUAA -2.00 GGAAAU -2.00 GGCAAU -2.00 GGAGAU -2.00 GGUGAU -2.00 GGGAAU -2.00 GUUCGU -2.00 GUACGU -2.00 GGCGAU -2.00 GUCCGU -2.00 GGUAAU -2.00 GCUUGU -2.00 GAUUUU -2.00 GUUUAU -2.00 UGAAAG -2.00 UGCAAG -2.00 UGAGAG -2.00 UGUGAG -2.00 UGGAAG -2.00 UUUCGG -2.00 UUACGG -2.00 UGCGAG -2.00 UUCCGG -2.00 UGUAAG -2.00 UCUUGG -2.00 UAUUUG -2.00 UUUUAG -2.00
Seq Energy -------------
FREE ENERGY BY SIZE OF LOOP
misc. loop functions
--> internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30)
1.079
asymmetric internal loops: the ninio equation
--> the maximum correction
3.00
--> the f(m) array (see ninio for details)
0.30 0.30 0.30 0.30
multibranched loops
--> offset, free base penalty, helix penalty
4.60 0.40 0.10
efn2 multibranched loops
offset, free base penalty, helix penalty
-->
10.10 -0.30 -0.30
terminal AU penalty
-->
0.00
bonus for GGG hairpin
-->
0.00
c hairpin slope
-->
0.00
c hairpin intercept
-->
0.00
c hairpin of 3
-->
0.00
Intermolecular initiation free energy
-->
4.10
GAIL Rule (Grossly Asymmetric Interior Loop Rule) (on/off <-> 1/0)
-->
0