2012 Syllabus (updated Feb 7, 2012)
Lectures
| √ | Which | What | When | Who | ||
| √ | Lecture 1 | Intro to protein and amino acid structure. | Jan 24, 2012 | cb | ||
| √ | Lecture 2 | Where do protein structures come from? | Jan 27, 2012 | cb | HW 1 | |
| √ | Lecture 3 | Protein classification. TOPS drawings. | Jan 31, 2012 | cb | ||
| √ | Lecture 4 | Rotation matrices. Least Squares. Superposition. | Feb 3, 2012 | cb | wiki | |
| √ | Lecture 5 | MOE workshop 1: Building small molecules | Feb 7, 2012 | cb | HW 1 due | |
| √ | Lecture 6 | MOE workshop 2: Secondary structure | Feb 10, 2012 | cb | Ex 5.1 due | |
| √ | Lecture 7 | Comparative modeling 1: Alignment, Deletions | Feb 14, 2012 | cb | HW 2 due | |
| ∅ | Lecture 8 | Comparative modeling 2. Insertions | Feb 17, 2012 | cb | ||
| ∅ | Lecture 9 | Comparative modeling 3. Outgaps. | Feb 21, 2012 | cb | HW 3 due | |
| ∅ | Lecture 10 | Comparative modeling 4. Voids and waters. | Feb 24, 2012 | cb | ||
| ∅ | Lecture 11 | Comparative modeling 5. Evaluation. | Feb 28, 2012 | cb | ||
| ∅ | Lecture 12 | Comparative modeling 6. Interpetation and significance. | Mar 2, 2012 | cb | ||
| ∅ | Lecture 13 | Review. | Mar 6, 2012 | cb | ||
| Mar 9, 2012 | cb | |||||
| Mar 12-20, 2012 | ||||||
| ∅ | Lecture 15 | Molecular Surfaces. Poisson-Boltzman equation | Mar 20, 2012 | cb | ||
| ∅ | Lecture 16 | Ab initio methods and threading. | Mar 23, 2012 | cb | ||
| ∅ | Lecture 17 | Force fields , Energy Minimization. | Mar 27, 2012 | cb | ||
| ∅ | Lecture 18 | Molecular Dynamics 1 | Mar 30, 2012 | cb | ||
| ∅ | Lecture 19 | Molecular Dynamics 1 | Apr 3, 2012 | cb | ||
| ∅ | Lecture 20 | guest lecture Nilesh Banavali | Apr 6, 2012 | cb | ||
| ∅ | Lecture 21 | Normal mode analysis | Apr 10, 2012 | |||
| ∅ | Lecture 21 | Docking 1 | Apr 13, 2012 | cb | ||
| ∅ | Lecture 22 | no class | Apr 17, 2012 | cb | ||
| ∅ | Lecture 23 | Docking 2 | Apr 20, 2012 | cb | ||
| ∅ | Lecture 24 | Protein Design 1 | Apr 24, 2012 | cb | ||
| ∅ | Lecture 25 | Protein Design 2 | Apr 27, 2012 | cb | ||
| ∅ | Lecture 26 | Review | May 1, 2012 | cb | ||
| May 4, 2012 | ||||||
| May 8, 2012 | ||||||
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Last updated Tue Feb 7 09:08:14 EST 2012