Protein Structure Determination, Fall 2012


Syllabus for 2012


Upload homework files here

 Term Project 

 Slides to review for final exam 

Lectures

∅√     What     When
 
------- First half: Solution NMR -------
 
Go to Prof Wang's course page
Aug 27 - Oct 11
 
-------MIDTERM (NMR)-------
Oct 11, 2012
 
------- Second half: X-ray crystallography -------
 
Xray Lecture 1    Overview. Crystals. Symmetry.    PDF    Oct 15, 2012
Xray Lecture 2    The scattering of X-rays by electrons.. PDF    Oct 18, 2012
Xray Lecture 3    Bragg’s law. Diffraction. PDF    Oct 22, 2012
Xray Lecture 4    The Reciprocal lattice. B-factors. PDF    Oct 25, 2012
Xray Lecture 5    Phasing. Isomorphous replacement. PDF    Oct 29, 2012 HW1 due
Xray Lecture 6    Anomalous scattering. PDF    Nov 1, 2012
Xray Lecture 7    Molecular replacement. PDF    Nov 5, 2012 Xray lab part 1 due
Xray Lecture 8    Model building. Manual refinement. PDF    Nov 8, 2012
Xray Lecture 9    Automated Refinement. PDF    Nov 12, 2012 Xray lab part 2 due
Xray Lecture 10    Model validation. PDF    Nov 15, 2012 Xray lab part 3 due
Xray Lecture 11    The Protein Data Bank. PDF    Nov 19, 2012 HW2 due
Xray Lecture 12    Exploring X-ray structures. PDF    Nov 26, 2012 Xray lab part 4 due
Xray Lecture 12    Exploring X-ray structures. PDF    Nov 29, 2012
 
-------- Presentations ---------
Dec 3, 2012
 
-------- Presentations ---------
Dec 6, 2012
 
-------Final Exam (Xray only)-------
Wed 12/12 11:30 - 1:30 in 2C13

Links etc

 Syllabus   Unix stuff  Download Jmol Download XrayView Download CCP4
 Movie 1   Movie 2   Bragg Planes (java)   Homework 4 
 Homework 5   Term Project   Get a PDB file   Homework 6   Homework X 
 short course 1   short course 2   MolProbity   Escher web sketch 
 Full Xray data set (716 Mb)   Xray data (subset 169Mb)   Molrep model   Molrep MTZ file 
 Fobs map   Unrefined coordinates 

Back to Courses page

Back to my home page


email me


Last updated Tue Dec 4 18:36:41 EST 2012 W3C validation