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Prediction of Melting Profiles for Nucleic Acids

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Table of Contents

Name

ct2rnaml - convert .ct file to RNAML

Synopsis

ct2rnaml prefix

Description

ct2rnaml reads prefix.ct and converts it to prefix.rnaml. All sequences and structures are encoded in the RNAML file; in addition, initial and/or revised energies are included if they are found in the .ct file.

ct2rnaml also reads the coordinatse of each base pair from prefix.ss or prefix_#.ss (where # is the number of the structure).

Table of Contents

• Name
• Synopsis
• Description

	Nicholas R. Markham Department of Computer Science	Michael Zuker Department of Mathematical Sciences
	Rensselaer Polytechnic Institute 2005-01-18