The DINAMelt Server

Prediction of Melting Profiles for Nucleic Acids

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Table of Contents

Name

ct-ext - compute absorbance for structure(s) in .ct format

Synopsis

ct-ext [OPTION]... [FILE]...

Description

ct-ext computes the UV absorbance of each structure in each FILE and writes it to standard output.

When no FILE is specified, or if FILE is -, ct-ext reads standard input.

Options

-n, --NA=RNA|DNA

sets nucleic acid type to RNA or DNA. Default is RNA.

--single

only sum extinctions for each nucelotide, rather than for each dinucleotide.

See Also

ct-energy(1), hybrid-min(1), hybrid-ss-min(1)

Table of Contents

• Name
• Synopsis
• Description
• Options
• See Also

	Nicholas R. Markham Department of Computer Science	Michael Zuker Department of Mathematical Sciences
	Rensselaer Polytechnic Institute 2005-01-18