Index of /~bystrc/MASKER/downloads

Icon  Name                    Last modified      Size  Description
[DIR] Parent Directory                             -   
[   ] masker                  31-Dec-2003 15:17  432   
[   ] pdbmask.tar.gz          17-Oct-2002 10:00  2.2M  
[   ] xpdbmask                09-Jan-2004 15:00  1.1M  

============================================================
                      MASKER
This directory contains the source code for MASKER, a program 
that calculates the solvent excluded surface of a molecule.
masker.f90 is a Fortran90 module. Fortran90 efficiently handles
the large array multiplications that this Boolean masking
method uses. 

MASKER is a fortran90 module, designed to be compiled with a f90
program and used using the 'use masker' command. The package includes
a simple front-end for calculating the surface from PDB-formatted
input: pdbmask.f90. This can serve as an example of how to
use the module. There are extensive comments within the programs.

INSTALLATION:
 Unpack this file pdbmask.tar.gz using 'tar -zxvf pdbmask.tar.gz'
 or 'zcat pdbmask.tar.gz | tar -xvf - '

 Compile using 'make'.  The Makefile is set up to use 'pgf90'. If you
 use another Fortran90 compiler, make the appropriate changes in Makefile.

FILES in pdbmask.tar.gz :
-rw-r--r--  1 bystrc   100        79071 Oct 16 12:42 masker/masker.f90
-rw-r--r--  1 bystrc   100         7129 Jun  7 13:48 masker/pdbmask.f90
-rw-r--r--  1 bystrc   100         1713 Mar 29  2002 masker/atoms.lib
-rw-r--r--  1 bystrc   100        27992 Jun 10 15:20 masker/vectormath.f
-rw-r--r--  1 bystrc   100     20910088 Nov 29  2001 masker/4096.mas
-rw-r--r--  1 bystrc   100          520 Nov 29  2001 masker/4096.vmask
-rw-r--r--  1 bystrc   100        38760 Nov 29  2001 masker/4096.tri
-rw-r--r--  1 bystrc   100       276437 Nov 29  2001 masker/4096.pdb
-rw-r--r--  1 bystrc   100         1625 Nov 29  2001 masker/4096.dat
-rw-r--r--  1 bystrc   100        85772 Feb  9  2002 masker/collars4096.bin
-rw-r--r--  1 bystrc   100          340 Dec 17  2001 masker/slopes4.5.dat
-rw-r--r--  1 bystrc   100        65544 Nov 29  2001 masker/cbits32.bin
-rw-r--r--  1 bystrc   100          906 Oct 16 13:04 masker/Makefile

Please cite:
C. Bystroff (2002) "MASKER: Improved solvent excluded molecular 
surface area estimations using Boolean masks"
Protein Engineering, 15:959-965 
============================================================